PSCBS (version 0.38.4)

Restructuring AbstractCBS objects: Restructuring AbstractCBS objects

Description

This page describes available methods for restructuring an AbstractCBS object.

• *append()- Appends oneAbstractCBSto another.
• *extractChromosomes()/*extractChromosome()- Extracts anAbstractCBSwith the specified chromosomes.
• *extractSegments()/*extractSegment()- Extracts anAbstractCBSwith the specified segments.
• *extractRegions()/*extractRegion()- Extracts anAbstractCBSwith the specified regions each of a certain size, where a region is defined as a connected set of segments.
• *dropRegions()/*dropRegion()- Drops specified regions and returns anAbstractCBSwithout them.
• *dropChangePoint()/*mergeTwoSegments()- Drops a change point by merging two neighboring segments and recalculates the statistics for the merged segment before returning anAbstractCBS.
• *dropChangePoints()- Drops zero or more change points and recalculates the segment statistics before returning anAbstractCBS.
• *mergeThreeSegments()- Merges a segment with its two flanking segments and recalculates the statistics for the merged segment before returning anAbstractCBS.

All of the above methods are implemented for CBS and PairedPSCBS objects.

See Also

For more information see AbstractCBS.